J3_6ZJ3_031
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUUG*CGAUAGUGCACAAGUAG*CGAAGG
- Length
- 27 nucleotides
- Bulged bases
- 6ZJ3|1|LA|U|21, 6ZJ3|1|LC|U|548, 6ZJ3|1|LC|A|556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_031 not in the Motif Atlas
- Geometric match to J3_8C3A_047
- Geometric discrepancy: 0.0724
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LA|C|19
6ZJ3|1|LA|U|20
6ZJ3|1|LA|U|21
6ZJ3|1|LA|G|22
*
6ZJ3|1|LC|C|545
6ZJ3|1|LC|G|546
6ZJ3|1|LC|A|547
6ZJ3|1|LC|U|548
6ZJ3|1|LC|A|549
6ZJ3|1|LC|G|550
6ZJ3|1|LC|U|551
6ZJ3|1|LC|G|552
6ZJ3|1|LC|C|553
6ZJ3|1|LC|A|554
6ZJ3|1|LC|C|555
6ZJ3|1|LC|A|556
6ZJ3|1|LC|A|557
6ZJ3|1|LC|G|558
6ZJ3|1|LC|U|559
6ZJ3|1|LC|A|560
6ZJ3|1|LC|G|561
*
6ZJ3|1|LC|C|568
6ZJ3|1|LC|G|569
6ZJ3|1|LC|A|570
6ZJ3|1|LC|A|571
6ZJ3|1|LC|G|572
6ZJ3|1|LC|G|573
Current chains
- Chain LA
- 5.8S rRNA
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Ll
- Ribosomal protein uL24
- Chain Ly
- Ribosomal protein eL37
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