J3_6ZJ3_035
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAUCG*(OMC)C*GAACAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_035 not in the Motif Atlas
- Geometric match to J3_8C3A_055
- Geometric discrepancy: 0.1
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LG|C|2091
6ZJ3|1|LG|A|2092
6ZJ3|1|LG|U|2093
6ZJ3|1|LG|C|2094
6ZJ3|1|LG|G|2095
*
6ZJ3|1|LH|OMC|2242
6ZJ3|1|LH|C|2243
*
6ZJ3|1|LH|G|2247
6ZJ3|1|LH|A|2248
6ZJ3|1|LH|A|2249
6ZJ3|1|LH|C|2250
6ZJ3|1|LH|A|2251
6ZJ3|1|LH|G|2252
Current chains
- Chain LG
- LSU rRNA chain 6
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lw
- Ribosomal protein eL34
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