J3_6ZJ3_036
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (OMG)UC*GCC(PSU)AACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6ZJ3|1|LI|C|3335, 6ZJ3|1|LI|U|3383
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_036 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.136
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|LI|OMG|3223
6ZJ3|1|LI|U|3224
6ZJ3|1|LI|C|3225
*
6ZJ3|1|LI|G|3329
6ZJ3|1|LI|C|3330
6ZJ3|1|LI|C|3331
6ZJ3|1|LI|PSU|3332
6ZJ3|1|LI|A|3333
6ZJ3|1|LI|A|3334
6ZJ3|1|LI|C|3335
6ZJ3|1|LI|G|3336
6ZJ3|1|LI|A|3337
6ZJ3|1|LI|U|3338
6ZJ3|1|LI|C|3339
6ZJ3|1|LI|C|3340
*
6ZJ3|1|LI|OMG|3379
6ZJ3|1|LI|G|3380
6ZJ3|1|LI|U|3381
6ZJ3|1|LI|G|3382
6ZJ3|1|LI|U|3383
6ZJ3|1|LI|C|3384
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain Lh
- Ribosomal protein eL21
- Chain S4
- Transfer RNA; tRNA
Coloring options: