J3_6ZJ3_040

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMG)GCUAAG*CACGC(A2M)AAU*(A2M)GC

Length

20 nucleotides

Bulged bases

6ZJ3|1|S1|A|47

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZJ3_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0761

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.2

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZJ3|1|S1|G|41
6ZJ3|1|S1|OMG|42
6ZJ3|1|S1|G|43
6ZJ3|1|S1|C|44
6ZJ3|1|S1|U|45
6ZJ3|1|S1|A|46
6ZJ3|1|S1|A|47
6ZJ3|1|S1|G|48
*
6ZJ3|1|S1|C|528
6ZJ3|1|S1|A|529
6ZJ3|1|S1|C|530
6ZJ3|1|S1|G|531
6ZJ3|1|S1|C|532
6ZJ3|1|S1|A2M|533
6ZJ3|1|S1|A|534
6ZJ3|1|S1|A|535
6ZJ3|1|S1|U|536
*
6ZJ3|1|S1|A2M|565
6ZJ3|1|S1|G|566
6ZJ3|1|S1|C|567

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SK

Ribosomal protein eS8

Chain SP

Ribosomal protein uS12