J3_6ZJ3_046
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGC*GUGC*GCU(A2M)
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|1898, 6ZJ3|1|S1|U|1899
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_046 not in the Motif Atlas
- Geometric match to J3_4V88_040
- Geometric discrepancy: 0.2057
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|S1|U|1746
6ZJ3|1|S1|G|1747
6ZJ3|1|S1|C|1748
*
6ZJ3|1|S1|G|1868
6ZJ3|1|S1|U|1869
6ZJ3|1|S1|G|1870
6ZJ3|1|S1|C|1871
*
6ZJ3|1|S1|G|1897
6ZJ3|1|S1|C|1898
6ZJ3|1|S1|U|1899
6ZJ3|1|S1|A2M|1900
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SH
- Ribosomal protein uS7
- Chain SL
- Ribosomal protein uS9
- Chain SM
- Ribosomal protein uS10
- Chain SV
- Ribosomal protein eS17
- Chain Sh
- RACK1
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