J3_6ZJ3_047

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGC*GUGCUG*UGCAUGCU(A2M)

Length

18 nucleotides

Bulged bases

6ZJ3|1|S1|C|1898, 6ZJ3|1|S1|U|1899

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZJ3_047 not in the Motif Atlas

Homologous match to J3_8C3A_086

Geometric discrepancy: 0.2525

The information below is about J3_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80847.1

Basepair signature

cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|S1|U|1746
6ZJ3|1|S1|G|1747
6ZJ3|1|S1|C|1748
*
6ZJ3|1|S1|G|1868
6ZJ3|1|S1|U|1869
6ZJ3|1|S1|G|1870
6ZJ3|1|S1|C|1871
6ZJ3|1|S1|U|1872
6ZJ3|1|S1|G|1873
*
6ZJ3|1|S1|U|1892
6ZJ3|1|S1|G|1893
6ZJ3|1|S1|C|1894
6ZJ3|1|S1|A|1895
6ZJ3|1|S1|U|1896
6ZJ3|1|S1|G|1897
6ZJ3|1|S1|C|1898
6ZJ3|1|S1|U|1899
6ZJ3|1|S1|A2M|1900

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SH

Ribosomal protein uS7

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10

Chain SV

Ribosomal protein eS17

Chain Sh

RACK1