J3_6ZLW_013

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZLW|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZLW_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.057

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZLW|1|2|A|40
6ZLW|1|2|G|41
6ZLW|1|2|A|42
6ZLW|1|2|U|43
6ZLW|1|2|U|44
6ZLW|1|2|A|45
6ZLW|1|2|A|46
6ZLW|1|2|G|47
*
6ZLW|1|2|C|479
6ZLW|1|2|G|480
6ZLW|1|2|C|481
6ZLW|1|2|G|482
6ZLW|1|2|C|483
6ZLW|1|2|A|484
6ZLW|1|2|A|485
6ZLW|1|2|A|486
6ZLW|1|2|U|487
*
6ZLW|1|2|A|512
6ZLW|1|2|G|513
6ZLW|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23