J3_6ZM5_003

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZM5_003 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1394

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

6ZM5|1|A|C|1930
6ZM5|1|A|A|1931
6ZM5|1|A|G|1932
*
6ZM5|1|A|C|1942
6ZM5|1|A|A|1943
6ZM5|1|A|C|1944
6ZM5|1|A|A|1945
6ZM5|1|A|C|1946
*
6ZM5|1|A|G|1970
6ZM5|1|A|A|1971
6ZM5|1|A|A|1972
6ZM5|1|A|G|1973

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial