J3_6ZM7_011

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6ZM7|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|A|2551
6ZM7|1|L5|G|2552
6ZM7|1|L5|A|2553
6ZM7|1|L5|U|2554
6ZM7|1|L5|G|2555
*
6ZM7|1|L5|C|2572
6ZM7|1|L5|A|2573
6ZM7|1|L5|G|2574
6ZM7|1|L5|U|2575
*
6ZM7|1|L5|A|2757
6ZM7|1|L5|G|2758
6ZM7|1|L5|G|2759
6ZM7|1|L5|G|2760
6ZM7|1|L5|U|2761
6ZM7|1|L5|G|2762
6ZM7|1|L5|U|2763
6ZM7|1|L5|A|2764
6ZM7|1|L5|A|2765
6ZM7|1|L5|A|2766
6ZM7|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27