J3_6ZM7_014
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6ZM7|1|L5|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZM7_014 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1623
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZM7|1|L5|C|4241
6ZM7|1|L5|U|4242
6ZM7|1|L5|C|4243
*
6ZM7|1|L5|G|4267
6ZM7|1|L5|A|4268
6ZM7|1|L5|G|4269
*
6ZM7|1|L5|C|4278
6ZM7|1|L5|A|4279
6ZM7|1|L5|A|4280
6ZM7|1|L5|A|4281
6ZM7|1|L5|A|4282
6ZM7|1|L5|G|4283
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
- Chain LT
- 60S ribosomal protein L21
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