J3_6ZM7_029
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZM7_029 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.0977
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZM7|1|S2|U|1350
6ZM7|1|S2|G|1351
*
6ZM7|1|S2|U|1360
6ZM7|1|S2|G|1361
6ZM7|1|S2|U|1362
6ZM7|1|S2|C|1363
*
6ZM7|1|S2|G|1375
6ZM7|1|S2|A|1376
6ZM7|1|S2|U|1377
6ZM7|1|S2|A|1378
6ZM7|1|S2|A|1379
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SC
- 40S ribosomal protein S2
- Chain SR
- 40S ribosomal protein S17
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