J3_6ZM7_033
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6ZM7|1|L5|U|354, 6ZM7|1|L5|A|362, 6ZM7|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZM7_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0554
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6ZM7|1|L5|C|351
6ZM7|1|L5|G|352
6ZM7|1|L5|A|353
6ZM7|1|L5|U|354
6ZM7|1|L5|A|355
6ZM7|1|L5|G|356
6ZM7|1|L5|U|357
6ZM7|1|L5|C|358
6ZM7|1|L5|A|359
6ZM7|1|L5|A|360
6ZM7|1|L5|C|361
6ZM7|1|L5|A|362
6ZM7|1|L5|A|363
6ZM7|1|L5|G|364
6ZM7|1|L5|U|365
6ZM7|1|L5|A|366
6ZM7|1|L5|C|367
*
6ZM7|1|L5|G|374
6ZM7|1|L5|G|375
6ZM7|1|L5|A|376
6ZM7|1|L5|A|377
6ZM7|1|L5|A|378
6ZM7|1|L5|G|379
*
6ZM7|1|L8|C|21
6ZM7|1|L8|U|22
6ZM7|1|L8|C|23
6ZM7|1|L8|G|24
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: