J3_6ZM7_040

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6ZM7|1|L5|U|4882, 6ZM7|1|L5|A|4938, 6ZM7|1|L5|C|4940, 6ZM7|1|L5|A|4943, 6ZM7|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|G|4751
6ZM7|1|L5|U|4752
6ZM7|1|L5|U|4753
6ZM7|1|L5|G|4754
*
6ZM7|1|L5|C|4879
6ZM7|1|L5|C|4880
6ZM7|1|L5|U|4881
6ZM7|1|L5|U|4882
6ZM7|1|L5|C|4883
*
6ZM7|1|L5|G|4936
6ZM7|1|L5|C|4937
6ZM7|1|L5|A|4938
6ZM7|1|L5|C|4939
6ZM7|1|L5|C|4940
6ZM7|1|L5|G|4941
6ZM7|1|L5|C|4942
6ZM7|1|L5|A|4943
6ZM7|1|L5|C|4944
6ZM7|1|L5|G|4945
6ZM7|1|L5|U|4946
6ZM7|1|L5|U|4947
6ZM7|1|L5|C|4948

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a