J3_6ZME_006

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZME_006 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2112

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6ZME|1|L5|G|1969
6ZME|1|L5|A|1970
6ZME|1|L5|C|1971
*
6ZME|1|L5|G|1995
6ZME|1|L5|C|1996
6ZME|1|L5|U|1997
6ZME|1|L5|A|1998
6ZME|1|L5|A|1999
6ZME|1|L5|G|2000
6ZME|1|L5|G|2001
*
6ZME|1|L5|C|2016
6ZME|1|L5|A|2017
6ZME|1|L5|C|2018

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12