J3_6ZME_010

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6ZME|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|A|2551
6ZME|1|L5|G|2552
6ZME|1|L5|A|2553
6ZME|1|L5|U|2554
6ZME|1|L5|G|2555
*
6ZME|1|L5|C|2572
6ZME|1|L5|A|2573
6ZME|1|L5|G|2574
6ZME|1|L5|U|2575
*
6ZME|1|L5|A|2757
6ZME|1|L5|G|2758
6ZME|1|L5|G|2759
6ZME|1|L5|G|2760
6ZME|1|L5|U|2761
6ZME|1|L5|G|2762
6ZME|1|L5|U|2763
6ZME|1|L5|A|2764
6ZME|1|L5|A|2765
6ZME|1|L5|A|2766
6ZME|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27