J3_6ZME_012

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZME_012 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1256

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6ZME|1|L5|C|3937
6ZME|1|L5|G|3938
6ZME|1|L5|G|3939
*
6ZME|1|L5|C|4074
6ZME|1|L5|U|4075
6ZME|1|L5|G|4076
6ZME|1|L5|A|4077
6ZME|1|L5|C|4078
*
6ZME|1|L5|G|4168
6ZME|1|L5|G|4169
6ZME|1|L5|A|4170
6ZME|1|L5|C|4171
6ZME|1|L5|A|4172
6ZME|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15