J3_6ZMI_009
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMI_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1468
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6ZMI|1|L5|U|2440
6ZMI|1|L5|C|2441
6ZMI|1|L5|G|2442
6ZMI|1|L5|G|2443
6ZMI|1|L5|U|2444
6ZMI|1|L5|C|2445
*
6ZMI|1|L5|G|2515
6ZMI|1|L5|G|2516
6ZMI|1|L5|A|2517
6ZMI|1|L5|G|2518
6ZMI|1|L5|U|2519
*
6ZMI|1|L5|A|2536
6ZMI|1|L5|A|2537
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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