3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CCG*UUCCG*CAAAG
Length
13 nucleotides
Bulged bases
6ZMI|1|S2|C|1138, 6ZMI|1|S2|A|1150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZMI|1|S2|C|1094
6ZMI|1|S2|C|1095
6ZMI|1|S2|G|1096
*
6ZMI|1|S2|U|1136
6ZMI|1|S2|U|1137
6ZMI|1|S2|C|1138
6ZMI|1|S2|C|1139
6ZMI|1|S2|G|1140
*
6ZMI|1|S2|C|1147
6ZMI|1|S2|A|1148
6ZMI|1|S2|A|1149
6ZMI|1|S2|A|1150
6ZMI|1|S2|G|1151

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SA
40S ribosomal protein SA
Chain SV
40S ribosomal protein S21
Chain SW
40S ribosomal protein S15a
Chain Sa
40S ribosomal protein S26
Chain Sb
40S ribosomal protein S27

Coloring options:

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