J3_6ZMO_022

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6ZMO|1|S2|C|1138, 6ZMO|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|S2|C|1094
6ZMO|1|S2|C|1095
6ZMO|1|S2|G|1096
*
6ZMO|1|S2|U|1136
6ZMO|1|S2|U|1137
6ZMO|1|S2|C|1138
6ZMO|1|S2|C|1139
6ZMO|1|S2|G|1140
*
6ZMO|1|S2|C|1147
6ZMO|1|S2|A|1148
6ZMO|1|S2|A|1149
6ZMO|1|S2|A|1150
6ZMO|1|S2|G|1151

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27