J3_6ZMO_034

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

6ZMO|1|L5|G|409, 6ZMO|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZMO_034 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.302

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ZMO|1|L5|U|380
6ZMO|1|L5|U|381
6ZMO|1|L5|G|382
6ZMO|1|L5|A|383
6ZMO|1|L5|A|384
6ZMO|1|L5|A|385
6ZMO|1|L5|A|386
6ZMO|1|L5|G|387
6ZMO|1|L5|A|388
6ZMO|1|L5|A|389
6ZMO|1|L5|C|390
*
6ZMO|1|L5|G|401
6ZMO|1|L5|A|402
6ZMO|1|L5|G|403
6ZMO|1|L5|U|404
6ZMO|1|L5|U|405
6ZMO|1|L5|C|406
6ZMO|1|L5|A|407
6ZMO|1|L5|A|408
6ZMO|1|L5|G|409
6ZMO|1|L5|A|410
6ZMO|1|L5|G|411
6ZMO|1|L5|G|412
6ZMO|1|L5|G|413
6ZMO|1|L5|C|414
6ZMO|1|L5|G|415
*
6ZMO|1|L8|C|19
6ZMO|1|L8|A|20

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39