J3_6ZMO_037

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

6ZMO|1|L5|C|2470, 6ZMO|1|L5|A|2472, 6ZMO|1|L5|G|2475, 6ZMO|1|L5|G|2503, 6ZMO|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZMO_037 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5903

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6ZMO|1|L5|A|2451
6ZMO|1|L5|G|2452
6ZMO|1|L5|A|2453
6ZMO|1|L5|U|2454
6ZMO|1|L5|G|2455
6ZMO|1|L5|G|2456
*
6ZMO|1|L5|C|2465
6ZMO|1|L5|G|2466
6ZMO|1|L5|U|2467
6ZMO|1|L5|U|2468
6ZMO|1|L5|C|2469
6ZMO|1|L5|C|2470
6ZMO|1|L5|G|2471
6ZMO|1|L5|A|2472
6ZMO|1|L5|A|2473
6ZMO|1|L5|G|2474
6ZMO|1|L5|G|2475
6ZMO|1|L5|G|2476
*
6ZMO|1|L5|C|2501
6ZMO|1|L5|G|2502
6ZMO|1|L5|G|2503
6ZMO|1|L5|C|2504
6ZMO|1|L5|C|2505
6ZMO|1|L5|G|2506
6ZMO|1|L5|A|2507
6ZMO|1|L5|U|2508

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37