J3_6ZMO_040
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6ZMO|1|L5|C|4337, 6ZMO|1|L5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMO_040 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0738
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6ZMO|1|L5|G|4228
6ZMO|1|L5|U|4229
6ZMO|1|L5|C|4230
*
6ZMO|1|L5|G|4331
6ZMO|1|L5|C|4332
6ZMO|1|L5|C|4333
6ZMO|1|L5|U|4334
6ZMO|1|L5|C|4335
6ZMO|1|L5|A|4336
6ZMO|1|L5|C|4337
6ZMO|1|L5|G|4338
6ZMO|1|L5|A|4339
6ZMO|1|L5|U|4340
6ZMO|1|L5|C|4341
6ZMO|1|L5|C|4342
*
6ZMO|1|L5|G|4370
6ZMO|1|L5|G|4371
6ZMO|1|L5|U|4372
6ZMO|1|L5|G|4373
6ZMO|1|L5|U|4374
6ZMO|1|L5|C|4375
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
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