J3_6ZMT_013

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZMT|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZMT_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0604

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZMT|1|2|A|40
6ZMT|1|2|G|41
6ZMT|1|2|A|42
6ZMT|1|2|U|43
6ZMT|1|2|U|44
6ZMT|1|2|A|45
6ZMT|1|2|A|46
6ZMT|1|2|G|47
*
6ZMT|1|2|C|479
6ZMT|1|2|G|480
6ZMT|1|2|C|481
6ZMT|1|2|G|482
6ZMT|1|2|C|483
6ZMT|1|2|A|484
6ZMT|1|2|A|485
6ZMT|1|2|A|486
6ZMT|1|2|U|487
*
6ZMT|1|2|A|512
6ZMT|1|2|G|513
6ZMT|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog