J3_6ZMW_001

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

6ZMW|1|A|C|483

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZMW_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.0808

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZMW|1|A|A|40
6ZMW|1|A|G|41
*
6ZMW|1|A|C|481
6ZMW|1|A|G|482
6ZMW|1|A|C|483
6ZMW|1|A|A2M|484
6ZMW|1|A|A|485
6ZMW|1|A|A|486
6ZMW|1|A|U|487
*
6ZMW|1|A|A|512
6ZMW|1|A|G|513
6ZMW|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23