J3_6ZMW_007
3D structure
- PDB id
- 6ZMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMW_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.17
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZMW|1|A|U|1225
6ZMW|1|A|G|1226
6ZMW|1|A|G|1227
6ZMW|1|A|A|1228
*
6ZMW|1|A|U|1530
6ZMW|1|A|A|1531
6ZMW|1|A|C|1532
*
6ZMW|1|A|G|1638
6ZMW|1|A|G|1639
6ZMW|1|A|A|1640
6ZMW|1|A|A|1641
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain d
- 40S ribosomal protein S19
- Chain f
- 40S ribosomal protein S18
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain w
- Transfer RNA; tRNA
Coloring options: