J3_6ZN5_003
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6ZN5|1|2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZN5_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1144
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZN5|1|2|A|938
6ZN5|1|2|U|939
6ZN5|1|2|U|940
6ZN5|1|2|C|941
*
6ZN5|1|2|G|985
6ZN5|1|2|G|986
6ZN5|1|2|A|987
6ZN5|1|2|C|988
6ZN5|1|2|C|989
6ZN5|1|2|A|990
6ZN5|1|2|G|991
6ZN5|1|2|A|992
6ZN5|1|2|G|993
*
6ZN5|1|2|C|1000
6ZN5|1|2|A|1001
6ZN5|1|2|U|1002
6ZN5|1|2|U|1003
6ZN5|1|2|U|1004
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S3a
- Chain N
- 40S ribosomal protein S13
- Chain P
- 40S ribosomal protein S14
- Chain c
- 40S ribosomal protein S26
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