J3_6ZN5_007
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6ZN5|1|2|G|1256, 6ZN5|1|2|A|1258, 6ZN5|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZN5_007 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0863
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZN5|1|2|C|1237
6ZN5|1|2|U|1238
6ZN5|1|2|U|1239
6ZN5|1|2|A|1240
6ZN5|1|2|A|1241
6ZN5|1|2|U|1242
6ZN5|1|2|U|1243
6ZN5|1|2|U|1244
*
6ZN5|1|2|G|1255
6ZN5|1|2|G|1256
6ZN5|1|2|G|1257
6ZN5|1|2|A|1258
6ZN5|1|2|A|1259
6ZN5|1|2|A|1260
6ZN5|1|2|C|1261
6ZN5|1|2|C|1262
6ZN5|1|2|U|1263
6ZN5|1|2|C|1264
6ZN5|1|2|A|1265
6ZN5|1|2|C|1266
*
6ZN5|1|2|G|1516
6ZN5|1|2|G|1517
6ZN5|1|2|C|1518
6ZN5|1|2|U|1519
6ZN5|1|2|G|1520
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S15
- Chain T
- 40S ribosomal protein S18
- Chain V
- 40S ribosomal protein S20
- Chain f
- 40S ribosomal protein S29
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: