J3_6ZOJ_013
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6ZOJ|1|2|U|1535, 6ZOJ|1|2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZOJ_013 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2519
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZOJ|1|2|C|1532
6ZOJ|1|2|A|1533
6ZOJ|1|2|C|1534
6ZOJ|1|2|U|1535
6ZOJ|1|2|G|1536
*
6ZOJ|1|2|C|1597
6ZOJ|1|2|G|1598
6ZOJ|1|2|U|1599
6ZOJ|1|2|G|1600
6ZOJ|1|2|A|1601
6ZOJ|1|2|U|1602
6ZOJ|1|2|G|1603
6ZOJ|1|2|G|1604
*
6ZOJ|1|2|C|1635
6ZOJ|1|2|G|1636
6ZOJ|1|2|A|1637
6ZOJ|1|2|G|1638
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S19
- Chain Z
- 40S ribosomal protein S25
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