J3_6ZOK_006

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZOK|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZOK_006 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0696

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZOK|1|2|A|40
6ZOK|1|2|G|41
6ZOK|1|2|A|42
6ZOK|1|2|U|43
6ZOK|1|2|U|44
6ZOK|1|2|A|45
6ZOK|1|2|A|46
6ZOK|1|2|G|47
*
6ZOK|1|2|C|479
6ZOK|1|2|G|480
6ZOK|1|2|C|481
6ZOK|1|2|G|482
6ZOK|1|2|C|483
6ZOK|1|2|A|484
6ZOK|1|2|A|485
6ZOK|1|2|A|486
6ZOK|1|2|U|487
*
6ZOK|1|2|A|512
6ZOK|1|2|G|513
6ZOK|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23