J3_6ZON_003

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUUUG

Length

20 nucleotides

Bulged bases

6ZON|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|937
6ZON|1|2|A|938
6ZON|1|2|U|939
6ZON|1|2|U|940
6ZON|1|2|C|941
*
6ZON|1|2|G|985
6ZON|1|2|G|986
6ZON|1|2|A|987
6ZON|1|2|C|988
6ZON|1|2|C|989
6ZON|1|2|A|990
6ZON|1|2|G|991
6ZON|1|2|A|992
6ZON|1|2|G|993
*
6ZON|1|2|C|1000
6ZON|1|2|A|1001
6ZON|1|2|U|1002
6ZON|1|2|U|1003
6ZON|1|2|U|1004
6ZON|1|2|G|1005

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26

Chain i

40S ribosomal protein S14

Chain m

40S ribosomal protein S13

Chain p

40S ribosomal protein S3a