J3_6ZON_006

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUGGA*UAC*GGAAUUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|G|1222
6ZON|1|2|A|1223
6ZON|1|2|G|1224
6ZON|1|2|U|1225
6ZON|1|2|G|1226
6ZON|1|2|G|1227
6ZON|1|2|A|1228
*
6ZON|1|2|U|1530
6ZON|1|2|A|1531
6ZON|1|2|C|1532
*
6ZON|1|2|G|1638
6ZON|1|2|G|1639
6ZON|1|2|A|1640
6ZON|1|2|A|1641
6ZON|1|2|U|1642
6ZON|1|2|U|1643
6ZON|1|2|C|1644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S5

Chain g

40S ribosomal protein S16

Chain k

40S ribosomal protein S18

Chain x

40S ribosomal protein S19