J3_6ZON_007

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

6ZON|1|2|G|1256, 6ZON|1|2|A|1258, 6ZON|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|1237
6ZON|1|2|U|1238
6ZON|1|2|U|1239
6ZON|1|2|A|1240
6ZON|1|2|A|1241
6ZON|1|2|U|1242
6ZON|1|2|U|1243
6ZON|1|2|U|1244
6ZON|1|2|G|1245
*
6ZON|1|2|C|1254
6ZON|1|2|G|1255
6ZON|1|2|G|1256
6ZON|1|2|G|1257
6ZON|1|2|A|1258
6ZON|1|2|A|1259
6ZON|1|2|A|1260
6ZON|1|2|C|1261
6ZON|1|2|C|1262
6ZON|1|2|U|1263
6ZON|1|2|C|1264
6ZON|1|2|A|1265
6ZON|1|2|C|1266
*
6ZON|1|2|G|1516
6ZON|1|2|G|1517
6ZON|1|2|C|1518
6ZON|1|2|U|1519
6ZON|1|2|G|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain h

40S ribosomal protein S20

Chain k

40S ribosomal protein S18

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15