J3_6ZON_008

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6ZON|1|2|G|1507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|G|1270
6ZON|1|2|C|1271
6ZON|1|2|C|1272
6ZON|1|2|C|1273
6ZON|1|2|G|1274
6ZON|1|2|G|1275
6ZON|1|2|A|1276
6ZON|1|2|C|1277
*
6ZON|1|2|G|1320
6ZON|1|2|G|1321
6ZON|1|2|G|1322
6ZON|1|2|U|1323
6ZON|1|2|G|1324
*
6ZON|1|2|U|1504
6ZON|1|2|U|1505
6ZON|1|2|A|1506
6ZON|1|2|G|1507
6ZON|1|2|A|1508
6ZON|1|2|U|1509
6ZON|1|2|G|1510
6ZON|1|2|U|1511
6ZON|1|2|C|1512

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15

Chain u

40S ribosomal protein S10

Chain v

40S ribosomal protein S12