J3_6ZON_011
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 6ZON|1|2|A|1454, 6ZON|1|2|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZON|1|2|C|1391
6ZON|1|2|U|1392
6ZON|1|2|G|1393
6ZON|1|2|G|1394
6ZON|1|2|C|1395
*
6ZON|1|2|G|1450
6ZON|1|2|G|1451
6ZON|1|2|A|1452
6ZON|1|2|C|1453
6ZON|1|2|A|1454
6ZON|1|2|A|1455
6ZON|1|2|G|1456
*
6ZON|1|2|C|1470
6ZON|1|2|C|1471
6ZON|1|2|C|1472
6ZON|1|2|G|1473
6ZON|1|2|A|1474
6ZON|1|2|G|1475
6ZON|1|2|A|1476
6ZON|1|2|U|1477
6ZON|1|2|U|1478
6ZON|1|2|G|1479
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Eukaryotic translation initiation factor 3 subunit D
- Chain S
- 40S ribosomal protein S28
- Chain V
- Receptor of activated protein C kinase 1
- Chain b
- 40S ribosomal protein S3
- Chain e
- 40S ribosomal protein S5
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain l
- 40S ribosomal protein S29
- Chain w
- 40S ribosomal protein S17
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