J3_6ZP4_001

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZP4_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.0731

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZP4|1|2|A|40
6ZP4|1|2|G|41
*
6ZP4|1|2|C|481
6ZP4|1|2|G|482
6ZP4|1|2|C|483
6ZP4|1|2|A|484
6ZP4|1|2|A|485
6ZP4|1|2|A|486
6ZP4|1|2|U|487
*
6ZP4|1|2|A|512
6ZP4|1|2|G|513
6ZP4|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23