J3_6ZQB_002
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6ZQB|1|D3|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZQB_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1554
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZQB|1|D3|A|881
6ZQB|1|D3|U|882
6ZQB|1|D3|C|883
6ZQB|1|D3|A|884
*
6ZQB|1|D3|U|928
6ZQB|1|D3|A|929
6ZQB|1|D3|A|930
6ZQB|1|D3|C|931
6ZQB|1|D3|U|932
6ZQB|1|D3|A|933
6ZQB|1|D3|C|934
6ZQB|1|D3|U|935
6ZQB|1|D3|G|936
*
6ZQB|1|D3|C|943
6ZQB|1|D3|A|944
6ZQB|1|D3|U|945
6ZQB|1|D3|U|946
6ZQB|1|D3|U|947
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DN
- 40S ribosomal protein S13
- Chain DO
- 40S ribosomal protein S14-A
- Chain JN
- Protein FAF1
- Chain JO
- KRR1 small subunit processome component
Coloring options: