J3_6ZQD_008
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|1473, 6ZQD|1|D3|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZQD_008 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.21
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZQD|1|D3|C|1470
6ZQD|1|D3|A|1471
6ZQD|1|D3|C|1472
6ZQD|1|D3|U|1473
6ZQD|1|D3|G|1474
*
6ZQD|1|D3|C|1533
6ZQD|1|D3|G|1534
6ZQD|1|D3|U|1535
6ZQD|1|D3|G|1536
6ZQD|1|D3|C|1537
6ZQD|1|D3|U|1538
6ZQD|1|D3|G|1539
6ZQD|1|D3|G|1540
*
6ZQD|1|D3|C|1571
6ZQD|1|D3|G|1572
6ZQD|1|D3|A|1573
6ZQD|1|D3|G|1574
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DF
- Rps5p
- Chain DS
- 40S ribosomal protein S18-A
- Chain DT
- 40S ribosomal protein S19-A
- Chain JG
- Ribosomal RNA small subunit methyltransferase NEP1
- Chain UB
- Nucleolar complex protein 14
- Chain UO
- U3 small nucleolar RNA-associated protein 15
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