3D structure

PDB id
6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
6ZQE|1|D3|U|45, 6ZQE|1|D3|A|47, 6ZQE|1|D3|C|433, 6ZQE|1|D3|A|437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZQE|1|D3|A|41
6ZQE|1|D3|G|42
6ZQE|1|D3|A|43
6ZQE|1|D3|U|44
6ZQE|1|D3|U|45
6ZQE|1|D3|A|46
6ZQE|1|D3|A|47
6ZQE|1|D3|G|48
*
6ZQE|1|D3|C|431
6ZQE|1|D3|G|432
6ZQE|1|D3|C|433
6ZQE|1|D3|G|434
6ZQE|1|D3|C|435
6ZQE|1|D3|A|436
6ZQE|1|D3|A|437
6ZQE|1|D3|A|438
6ZQE|1|D3|U|439
*
6ZQE|1|D3|A|464
6ZQE|1|D3|G|465
6ZQE|1|D3|U|466

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CL
Ribosome biogenesis protein BMS1
Chain DJ
40S ribosomal protein S9-A
Chain DX
40S ribosomal protein S23-A
Chain JD
Probable ATP-dependent RNA helicase DHR1

Coloring options:

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