J3_6ZQE_001
3D structure
- PDB id
- 6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6ZQE|1|D3|U|45, 6ZQE|1|D3|A|47, 6ZQE|1|D3|C|433, 6ZQE|1|D3|A|437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZQE|1|D3|A|41
6ZQE|1|D3|G|42
6ZQE|1|D3|A|43
6ZQE|1|D3|U|44
6ZQE|1|D3|U|45
6ZQE|1|D3|A|46
6ZQE|1|D3|A|47
6ZQE|1|D3|G|48
*
6ZQE|1|D3|C|431
6ZQE|1|D3|G|432
6ZQE|1|D3|C|433
6ZQE|1|D3|G|434
6ZQE|1|D3|C|435
6ZQE|1|D3|A|436
6ZQE|1|D3|A|437
6ZQE|1|D3|A|438
6ZQE|1|D3|U|439
*
6ZQE|1|D3|A|464
6ZQE|1|D3|G|465
6ZQE|1|D3|U|466
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
Coloring options: