J3_6ZQE_004

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

6ZQE|1|D3|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZQE_004 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1319

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6ZQE|1|D3|A|881
6ZQE|1|D3|U|882
6ZQE|1|D3|C|883
6ZQE|1|D3|A|884
*
6ZQE|1|D3|U|928
6ZQE|1|D3|A|929
6ZQE|1|D3|A|930
6ZQE|1|D3|C|931
6ZQE|1|D3|U|932
6ZQE|1|D3|A|933
6ZQE|1|D3|C|934
6ZQE|1|D3|U|935
6ZQE|1|D3|G|936
*
6ZQE|1|D3|C|943
6ZQE|1|D3|A|944
6ZQE|1|D3|U|945
6ZQE|1|D3|U|946
6ZQE|1|D3|U|947

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain JJ

Pre-rRNA-processing protein PNO1