J3_6ZQE_009
3D structure
- PDB id
- 6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 6ZQE|1|D3|U|227, 6ZQE|1|D3|U|238, 6ZQE|1|D3|C|239, 6ZQE|1|D3|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZQE|1|D3|A|213
6ZQE|1|D3|G|214
6ZQE|1|D3|A|215
6ZQE|1|D3|U|216
6ZQE|1|D3|A|217
6ZQE|1|D3|A|218
6ZQE|1|D3|A|219
6ZQE|1|D3|A|220
6ZQE|1|D3|A|221
6ZQE|1|D3|A|222
6ZQE|1|D3|U|223
6ZQE|1|D3|C|224
6ZQE|1|D3|A|225
6ZQE|1|D3|A|226
6ZQE|1|D3|U|227
6ZQE|1|D3|G|228
*
6ZQE|1|D3|C|237
6ZQE|1|D3|U|238
6ZQE|1|D3|C|239
6ZQE|1|D3|U|240
6ZQE|1|D3|U|241
6ZQE|1|D3|U|242
6ZQE|1|D3|G|243
*
6ZQE|1|D3|C|250
6ZQE|1|D3|A|251
6ZQE|1|D3|U|252
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
Coloring options: