J3_6ZQF_009

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6ZQF|1|D3|A|217, 6ZQF|1|D3|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|A|213
6ZQF|1|D3|G|214
6ZQF|1|D3|A|215
6ZQF|1|D3|U|216
6ZQF|1|D3|A|217
6ZQF|1|D3|A|218
6ZQF|1|D3|A|219
6ZQF|1|D3|A|220
6ZQF|1|D3|A|221
6ZQF|1|D3|A|222
6ZQF|1|D3|U|223
6ZQF|1|D3|C|224
6ZQF|1|D3|A|225
6ZQF|1|D3|A|226
6ZQF|1|D3|U|227
6ZQF|1|D3|G|228
*
6ZQF|1|D3|C|237
6ZQF|1|D3|U|238
6ZQF|1|D3|C|239
6ZQF|1|D3|U|240
6ZQF|1|D3|U|241
6ZQF|1|D3|U|242
6ZQF|1|D3|G|243
*
6ZQF|1|D3|C|250
6ZQF|1|D3|A|251
6ZQF|1|D3|U|252

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-A