J3_6ZS9_014

3D structure

PDB id

6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with ribosome recycling factor

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZS9|1|XA|A|3005, 6ZS9|1|XA|U|3006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZS9_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1738

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6ZS9|1|XA|C|3004
6ZS9|1|XA|A|3005
6ZS9|1|XA|U|3006
6ZS9|1|XA|C|3007
*
6ZS9|1|XA|G|3032
6ZS9|1|XA|U|3033
6ZS9|1|XA|U|3034
*
6ZS9|1|XA|A|3048
6ZS9|1|XA|U|3049
6ZS9|1|XA|U|3050
6ZS9|1|XA|A|3051
6ZS9|1|XA|A|3052
6ZS9|1|XA|A|3053
6ZS9|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial