J3_6ZSB_014

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZSB|1|XA|A|3005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSB_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1927

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6ZSB|1|XA|C|3004
6ZSB|1|XA|A|3005
6ZSB|1|XA|U|3006
6ZSB|1|XA|C|3007
*
6ZSB|1|XA|G|3032
6ZSB|1|XA|U|3033
6ZSB|1|XA|U|3034
*
6ZSB|1|XA|A|3048
6ZSB|1|XA|U|3049
6ZSB|1|XA|U|3050
6ZSB|1|XA|A|3051
6ZSB|1|XA|A|3052
6ZSB|1|XA|A|3053
6ZSB|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial