J3_6ZSC_014

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZSC|1|XA|A|3005, 6ZSC|1|XA|U|3006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSC_014 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1266

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6ZSC|1|XA|C|3004
6ZSC|1|XA|A|3005
6ZSC|1|XA|U|3006
6ZSC|1|XA|C|3007
*
6ZSC|1|XA|G|3032
6ZSC|1|XA|U|3033
6ZSC|1|XA|U|3034
*
6ZSC|1|XA|A|3048
6ZSC|1|XA|U|3049
6ZSC|1|XA|U|3050
6ZSC|1|XA|A|3051
6ZSC|1|XA|A|3052
6ZSC|1|XA|A|3053
6ZSC|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial