J3_6ZSD_014

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZSD|1|XA|A|3005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSD_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1449

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6ZSD|1|XA|C|3004
6ZSD|1|XA|A|3005
6ZSD|1|XA|U|3006
6ZSD|1|XA|C|3007
*
6ZSD|1|XA|G|3032
6ZSD|1|XA|U|3033
6ZSD|1|XA|U|3034
*
6ZSD|1|XA|A|3048
6ZSD|1|XA|U|3049
6ZSD|1|XA|U|3050
6ZSD|1|XA|A|3051
6ZSD|1|XA|A|3052
6ZSD|1|XA|A|3053
6ZSD|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial