J3_6ZSE_011

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZSE|1|XA|A|3005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSE_011 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1942

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6ZSE|1|XA|C|3004
6ZSE|1|XA|A|3005
6ZSE|1|XA|U|3006
6ZSE|1|XA|C|3007
*
6ZSE|1|XA|G|3032
6ZSE|1|XA|U|3033
6ZSE|1|XA|U|3034
*
6ZSE|1|XA|A|3048
6ZSE|1|XA|U|3049
6ZSE|1|XA|U|3050
6ZSE|1|XA|A|3051
6ZSE|1|XA|A|3052
6ZSE|1|XA|A|3053
6ZSE|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial