J3_6ZSG_014

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6ZSG|1|XA|A|3005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSG_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1648

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6ZSG|1|XA|C|3004
6ZSG|1|XA|A|3005
6ZSG|1|XA|U|3006
6ZSG|1|XA|C|3007
*
6ZSG|1|XA|G|3032
6ZSG|1|XA|U|3033
6ZSG|1|XA|U|3034
*
6ZSG|1|XA|A|3048
6ZSG|1|XA|U|3049
6ZSG|1|XA|U|3050
6ZSG|1|XA|A|3051
6ZSG|1|XA|A|3052
6ZSG|1|XA|A|3053
6ZSG|1|XA|G|3054

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial