3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTJ_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0796
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6ZTJ|1|AA|C|936
6ZTJ|1|AA|A|937
6ZTJ|1|AA|A|938
6ZTJ|1|AA|G|939
*
6ZTJ|1|AA|C|1344
6ZTJ|1|AA|U|1345
6ZTJ|1|AA|A|1346
6ZTJ|1|AA|G|1347
6ZTJ|1|AA|U|1348
6ZTJ|1|AA|A|1349
6ZTJ|1|AA|A|1350
*
6ZTJ|1|AA|U|1372
6ZTJ|1|AA|G|1373
6ZTJ|1|AA|A|1374
6ZTJ|1|AA|A|1375
6ZTJ|1|AA|U|1376
6ZTJ|1|AA|A|1377
6ZTJ|1|AA|C|1378
6ZTJ|1|AA|G|1379

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9

Coloring options:


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