3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6ZTJ|1|BA|U|34, 6ZTJ|1|BA|U|448, 6ZTJ|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTJ_034 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0799
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6ZTJ|1|BA|C|32
6ZTJ|1|BA|C|33
6ZTJ|1|BA|U|34
6ZTJ|1|BA|G|35
*
6ZTJ|1|BA|C|445
6ZTJ|1|BA|G|446
6ZTJ|1|BA|A|447
6ZTJ|1|BA|U|448
6ZTJ|1|BA|A|449
6ZTJ|1|BA|G|450
6ZTJ|1|BA|U|451
6ZTJ|1|BA|G|452
6ZTJ|1|BA|A|453
6ZTJ|1|BA|A|454
6ZTJ|1|BA|C|455
6ZTJ|1|BA|C|456
6ZTJ|1|BA|A|457
6ZTJ|1|BA|G|458
6ZTJ|1|BA|U|459
6ZTJ|1|BA|A|460
6ZTJ|1|BA|C|461
*
6ZTJ|1|BA|G|468
6ZTJ|1|BA|G|469
6ZTJ|1|BA|A|470
6ZTJ|1|BA|A|471
6ZTJ|1|BA|A|472
6ZTJ|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain BE
50S ribosomal protein L4
Chain BR
50S ribosomal protein L20
Chain BU
50S ribosomal protein L23

Coloring options:


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