J3_6ZTM_022

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTM_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0536

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6ZTM|1|BA|C|2091
6ZTM|1|BA|U|2092
6ZTM|1|BA|G|2093
*
6ZTM|1|BA|C|2196
6ZTM|1|BA|U|2197
6ZTM|1|BA|A|2198
6ZTM|1|BA|A|2199
6ZTM|1|BA|C|2200
*
6ZTM|1|BA|G|2223
6ZTM|1|BA|G|2224
6ZTM|1|BA|A|2225
6ZTM|1|BA|C|2226
6ZTM|1|BA|A|2227
6ZTM|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BY

50S ribosomal protein L28